Genetic Vouchers

Owned by Edmond Chuc (Unlicensed)
Last updated: 01 May 2020 by Javier Sanchez
5 min read

Input

Source: AUSPLOTS_RANGELANDS.GENETIC_VOUCHERS

Interpretation in TERN Plot Ontology

Encoding each row in RDF requires:

  • todo

Mapping Table

Source Column

Destination RDF Predicate

Comments

Source Column

Destination RDF Predicate

Comments

veg_barcode

dct:identifier, rdfs:label, sosa:hasSample

Domain: ssn-ext:ObservationCollection with dct:type

TERN: Flora Species

AUSPLOTS: Plant species

Range: sosa:Sample

  • sosa:hasResult:

    • rdf:type: data:Text

    • data:value: veg_barcode

Create sosa:Sampling instance

site_location_visit_id

ssn-ext:isMemberOf

 

sample_for_dna

rdfs:comment

 

sample_for_isotope

 

Not captured by TERN Plot Ontology.

All values are either null or with text value as “NULL”.

tea_bag_is_synthetic

 

Not captured by TERN Plot Ontology.

All values are null.

primary_gen_barcode

sosa:hasSample

Domain: sosa:Sample of veg_barcode

Range: sosa:Sample

  • sosa:hasResult:

    • rdf:type: data:Text

    • data:value: primary_gen_barcode

Create sosa:Sampling instance

secondary_gen_barcode_1

sosa:hasSample

Domain: sosa:Sample of veg_barcode

Range: sosa:Sample

  • sosa:hasResult:

    • rdf:type: data:Text

    • data:value: secondary_gen_barcode_1

Create sosa:Sampling instance

secondary_gen_barcode_2

sosa:hasSample

Domain: sosa:Sample of veg_barcode

Range: sosa:Sample

  • sosa:hasResult:

    • rdf:type: data:Text

    • data:value: secondary_gen_barcode_2

Create sosa:Sampling instance

secondary_gen_barcode_3

sosa:hasSample

Domain: sosa:Sample of veg_barcode

Range: sosa:Sample

  • sosa:hasResult:

    • rdf:type: data:Text

    • data:value: secondary_gen_barcode_3

Create sosa:Sampling instance

secondary_gen_barcode_4

sosa:hasSample

Domain: sosa:Sample of veg_barcode

Range: sosa:Sample

  • sosa:hasResult:

    • rdf:type: data:Text

    • data:value: secondary_gen_barcode_4

Create sosa:Sampling instance

genetic_barcode_analysis_url

dct:identifier

Not captured by TERN Plot Ontology.

All values are null.

Example Row

VEG_BARCODE

SITE_LOCATION_VISIT_ID

SAMPLE_FOR_DNA

SAMPLE_FOR_ISOTOPE

TEA_BAG_IS_SYNTHETIC

PRIMARY_GEN_BARCODE

SECONDARY_GEN_BARCODE_1

SECONDARY_GEN_BARCODE_2

SECONDARY_GEN_BARCODE_3

SECONDARY_GEN_BARCODE_4

GENETIC_BARCODE_ANALYSIS_URL

VEG_BARCODE

SITE_LOCATION_VISIT_ID

SAMPLE_FOR_DNA

SAMPLE_FOR_ISOTOPE

TEA_BAG_IS_SYNTHETIC

PRIMARY_GEN_BARCODE

SECONDARY_GEN_BARCODE_1

SECONDARY_GEN_BARCODE_2

SECONDARY_GEN_BARCODE_3

SECONDARY_GEN_BARCODE_4

GENETIC_BARCODE_ANALYSIS_URL

QDA 003639

53471

null

null

null

QDA 003640

null

null

null

null

null

Example RDF

@prefix ausplots: <http://linked.data.gov.au/dataset/ausplots/> . @prefix ausplots-cv: <http://linked.data.gov.au/def/ausplots-cv/> . @prefix data: <http://linked.data.gov.au/def/datatype/> . @prefix dct: <http://purl.org/dc/terms/> . @prefix plot: <http://linked.data.gov.au/def/plot/> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix sosa: <http://www.w3.org/ns/sosa/> . @prefix ssn-ext: <http://www.w3.org/ns/ssn/ext/> . @prefix time: <http://www.w3.org/2006/time#> . ausplots:ps-oc-53471 a ssn-ext:ObservationCollection ; rdfs:label "AUSPLOTS Rangelands 'Plant Species' Observation Collection for SiteVisit: '53471'" ; plot:wasSubActivityOf ausplots:sv-53471 ; dct:type ausplots-cv:7a16d69b-0580-4aa0-aef1-9c41c78ebd99 ; sosa:hasFeatureOfInterest [ sosa:isSampleOf ausplots:site-59890 ] ; sosa:hasSample <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003639>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003649>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003651>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003657>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003659>, ... <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003749>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003751>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003753> . ausplots:ps-oc-58053 a ssn-ext:ObservationCollection ; rdfs:label "AUSPLOTS Rangelands 'Plant Species' Observation Collection for SiteVisit: '58053'" ; plot:wasSubActivityOf ausplots:sv-58053 ; dct:type ausplots-cv:7a16d69b-0580-4aa0-aef1-9c41c78ebd99 ; sosa:hasFeatureOfInterest [ sosa:isSampleOf ausplots:site-60341 ] ; sosa:hasSample ausplots:sample-SAA005830, ausplots:sample-SAA005831, ausplots:sample-SAA005832, ... ausplots:sample-SAA005843, ausplots:sample-SAA005844 . ausplots:t2013-06-13-h15-m1-s0 a time:Instant ; time:inXSDDateTime "t2013-06-13-h15-m1-s0" . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003639> sosa:hasSample <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003640> . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003640> a sosa:Sample ; rdfs:label "Sample: 'QDA 003640'" ; dct:identifier "QDA 003640" ; rdfs:comment "Column: PRIMARY_GEN_BARCODE" ; sosa:isResultOf [ a sosa:Sampling ; sosa:usedProcedure [ a sosa:Procedure ; data:value ausplots-cv:34192a13-38ba-4508-8395-57a5d9ac18f2 ] ] . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003649> sosa:hasSample <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003650> . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003650> a sosa:Sample ; rdfs:label "Sample: 'QDA 003650'" ; dct:identifier "QDA 003650" ; rdfs:comment "Column: PRIMARY_GEN_BARCODE" ; sosa:isResultOf [ a sosa:Sampling ; sosa:usedProcedure [ a sosa:Procedure ; data:value ausplots-cv:34192a13-38ba-4508-8395-57a5d9ac18f2 ] ] . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003651> sosa:hasSample <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003652>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003653>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003654>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003655>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003656> . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003652> a sosa:Sample ; rdfs:label "Sample: 'QDA 003652'" ; dct:identifier "QDA 003652" ; rdfs:comment "Column: PRIMARY_GEN_BARCODE" ; sosa:isResultOf [ a sosa:Sampling ; sosa:usedProcedure [ a sosa:Procedure ; data:value ausplots-cv:34192a13-38ba-4508-8395-57a5d9ac18f2 ] ] . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003653> a sosa:Sample ; rdfs:label "Sample: 'QDA 003653'" ; dct:identifier "QDA 003653" ; rdfs:comment "Column: SECONDARY_GEN_BARCODE_4" ; sosa:isResultOf [ a sosa:Sampling ; sosa:usedProcedure [ a sosa:Procedure ; data:value ausplots-cv:34192a13-38ba-4508-8395-57a5d9ac18f2 ] ] . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003654> a sosa:Sample ; rdfs:label "Sample: 'QDA 003654'" ; dct:identifier "QDA 003654" ; rdfs:comment "Column: SECONDARY_GEN_BARCODE_3" ; sosa:isResultOf [ a sosa:Sampling ; sosa:usedProcedure [ a sosa:Procedure ; data:value ausplots-cv:34192a13-38ba-4508-8395-57a5d9ac18f2 ] ] . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003655> a sosa:Sample ; rdfs:label "Sample: 'QDA 003655'" ; dct:identifier "QDA 003655" ; rdfs:comment "Column: SECONDARY_GEN_BARCODE_2" ; sosa:isResultOf [ a sosa:Sampling ; sosa:usedProcedure [ a sosa:Procedure ; data:value ausplots-cv:34192a13-38ba-4508-8395-57a5d9ac18f2 ] ] . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003656> a sosa:Sample ; rdfs:label "Sample: 'QDA 003656'" ; dct:identifier "QDA 003656" ; rdfs:comment "Column: SECONDARY_GEN_BARCODE_1" ; sosa:isResultOf [ a sosa:Sampling ; sosa:usedProcedure [ a sosa:Procedure ; data:value ausplots-cv:34192a13-38ba-4508-8395-57a5d9ac18f2 ] ] . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003657> sosa:hasSample <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003658> . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003658> a sosa:Sample ; rdfs:label "Sample: 'QDA 003658'" ; dct:identifier "QDA 003658" ; rdfs:comment "Column: PRIMARY_GEN_BARCODE" ; sosa:isResultOf [ a sosa:Sampling ; sosa:usedProcedure [ a sosa:Procedure ; data:value ausplots-cv:34192a13-38ba-4508-8395-57a5d9ac18f2 ] ] . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003659> sosa:hasSample <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003676> . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003661> sosa:hasSample <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003662> . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003662> a sosa:Sample ; rdfs:label "Sample: 'QDA 003662'" ; dct:identifier "QDA 003662" ; rdfs:comment "Column: PRIMARY_GEN_BARCODE" ; sosa:isResultOf [ a sosa:Sampling ; sosa:usedProcedure [ a sosa:Procedure ; data:value ausplots-cv:34192a13-38ba-4508-8395-57a5d9ac18f2 ] ] . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003663> sosa:hasSample <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003664>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003665>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003666>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003667>, <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003668> .