Herbarium Determination

Input

Source: AUSPLOTS_RANGELANDS.HERBARIUM_DETERMINATION

Interpretation in TERN Plot Ontology

Encoding each row in RDF requires:

  • Use skos:closeMatch to map to the Australian Plant Census.

Mapping Table

Source Column

Destination RDF Predicate

Comments

Source Column

Destination RDF Predicate

Comments

veg_barcode

dct:identifier, rdfs:label

Domain: ssn-ext:ObservationCollection with dct:type

TERN: Flora Species

AUSPLOTS: Plant species

Range: sosa:Sample

  • sosa:hasResult:

    • rdf:type: data:Text

    • data:value: veg_barcode

  • dwc:materialSampleID: veg_barcode

Create sosa:Sampling instance

herbarium_determination

dwc:scientificName

Domain: dwc:Identification

Range: herbarium_determination

state_accession_number

dwc:identificationID

Domain: dwct:Identification

Range: state_accession_number

determiner

dwc:identifiedBy

Domain: dwc:Identification

Range: determiner

determination_date

dwc:dateIdentified

Domain: dwc:Identification

Range: determination_date as xsd:dateTime

is_uncertain_determination

dwc:identificationRemarks

 

specimen_stored_at

dwc:identificationRemarks

 

determiner_comment

dwc:identificationRemarks

 

Example Row

VEG_BARCODE

HERBARIUM_DETERMINATION

STATE_ACCESSION_NUMBER

DETERMINER

DETERMINATION_DATE

IS_UNCERTAIN_DETERMINATION

SPECIMEN_STORED_AT

DETERMINER_COMMENT

VEG_BARCODE

HERBARIUM_DETERMINATION

STATE_ACCESSION_NUMBER

DETERMINER

DETERMINATION_DATE

IS_UNCERTAIN_DETERMINATION

SPECIMEN_STORED_AT

DETERMINER_COMMENT

QDA 003639

Grevillea parallela

 

D. Halford QLD Herbarium Brisbane

2013-10-14 23:00:00

FALSE

TERN AusPlots Facility, University of Adelaide

 

Example RDF

@prefix ausplots: <http://linked.data.gov.au/dataset/ausplots/> . @prefix ausplots-cv: <http://linked.data.gov.au/def/ausplots-cv/> . @prefix biod: <http://linked.data.gov.au/def/biodiversity/> . @prefix bioreg: <http://linked.data.gov.au/dataset/bioregion/> . @prefix data: <http://linked.data.gov.au/def/datatype/> . @prefix dct: <http://purl.org/dc/terms/> . @prefix dwct: <http://rs.tdwg.org/dwc/terms/> . @prefix epsg-crs: <http://www.opengis.net/def/crs/epsg/0/> . @prefix geo: <http://www.w3.org/2003/01/geo/wgs84_pos#> . @prefix geosparql: <http://www.opengis.net/ont/geosparql#> . @prefix geosparql-ext: <http://linked.data.gov.au/def/geox#> . @prefix ldp: <http://www.w3.org/ns/ldp#> . @prefix locn: <http://www.w3.org/ns/locn#> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix plot: <http://linked.data.gov.au/def/plot/> . @prefix plot-x: <http://linked.data.gov.au/def/plot/x/> . @prefix prov: <http://www.w3.org/ns/prov#> . @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix reg: <http://purl.org/linked-data/registry/> . @prefix sdo: <http://schema.org/> . @prefix skos: <http://www.w3.org/2004/02/skos/core#> . @prefix sosa: <http://www.w3.org/ns/sosa/> . @prefix ssn: <http://www.w3.org/ns/ssn/> . @prefix ssn-ext: <http://www.w3.org/ns/ssn/ext/> . @prefix time: <http://www.w3.org/2006/time#> . @prefix ui: <http://purl.org/linked-data/registry-ui#> . @prefix unit: <http://qudt.org/vocab/unit/> . @prefix void: <http://rdfs.org/ns/void#> . @prefix xml: <http://www.w3.org/XML/1998/namespace> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . ausplots:ps-oc-53471 a ssn-ext:ObservationCollection ; rdfs:label "AUSPLOTS Rangelands 'Plant Species' Observation Collection for SiteVisit: '53471'" ; plot:wasSubActivityOf ausplots:sv-53471 ; dct:type ausplots-cv:7a16d69b-0580-4aa0-aef1-9c41c78ebd99 ; sosa:hasFeatureOfInterest [ sosa:isSampleOf ausplots:site-59890 ] . <http://linked.data.gov.au/dataset/ausplots/id-sample-QDA++003639> a dwct:Identification ; dwct:dateIdentified "2013-10-14T23:00:00"^^xsd:dateTime ; dwct:identificationRemarks """Is uncertain determination: False Specimen stored at: TERN AusPlots Facility, University of Adelaide """ ; dwct:identifiedBy "D. Halford QLD Herbarium Brisbane" ; dwct:scientificName "Grevillea parallela" ; skos:closeMatch <http://linked.data.gov.au/def/biodiversity/Grevillea+parallela> . <http://linked.data.gov.au/dataset/ausplots/sample-QDA++003639> dwct:materialSampleID "QDA 003639" ; dwct:nameAccordingTo <http://linked.data.gov.au/dataset/ausplots/id-sample-QDA++003639> . <http://linked.data.gov.au/def/biodiversity/Grevillea+parallela> a dwct:Taxon, skos:Concept ; dct:created "2013-04-19 14:38:06+10"^^xsd:dateTime ; dct:modified "2013-04-19 14:38:06+10"^^xsd:dateTime ; dwct:acceptedNameUsage "Grevillea parallela Knight" ; dwct:acceptedNameUsageID <https://id.biodiversity.org.au/tree/51341367/51218638> ; dwct:class "Equisetopsida" ; dwct:family "Proteaceae" ; dwct:higherClassification "Plantae|Charophyta|Equisetopsida|Magnoliidae|Proteanae|Proteales|Proteaceae|Grevillea|parallela" ; dwct:kingdom "Plantae" ; dwct:nameAccordingTo "CHAH (2005), Australian Plant Census" ; dwct:nameAccordingToID <https://id.biodiversity.org.au/reference/apni/42312> ; dwct:nomenclaturalCode "ICN" ; dwct:parentNameUsageID <https://id.biodiversity.org.au/tree/51341367/51218135> ; dwct:scientificName "Grevillea parallela Knight" ; dwct:scientificNameAuthorship "Knight" ; dwct:scientificNameID <https://id.biodiversity.org.au/name/apni/108891> ; dwct:taxonConceptID <https://id.biodiversity.org.au/instance/apni/601381> ; dwct:taxonID <https://id.biodiversity.org.au/tree/51341367/51218638> ; dwct:taxonRank "Species" ; dwct:taxonomicStatus "accepted" ; skos:altLabel "Grevillea parallela" ; skos:inScheme biod:apc-taxa ; skos:prefLabel "Grevillea parallela Knight" . biod:apc-taxa a skos:ConceptScheme ; dct:description "A vocabulary of taxon terms from the Australian Plant Census (APC) dataset. This is a combined collection of Biodiversity's Vascular Plants and AusMoss APC taxonomic data." ; dct:isPartOf <http://linked.data.gov.au/dataset/apc> ; skos:hasTopConcept <http://linked.data.gov.au/def/biodiversity/Grevillea+parallela> ; skos:prefLabel "Australian Plant Census Taxa" .